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What is FnCas9 Enzyme?

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From UPSC perspective, the following things are important :

Prelims level: FnCas9 Enzyme

Why in the News?

  • Scientists from the “CSIR-Institute of Genomics and Integrative Biology” have developed an enhanced genome-editing system using FnCas9 that can modify DNA more precisely and more efficiently than existing CRISPR-based technologies.
    • CRISPR occurs naturally in some bacteria, as a part of their immune system that limits infections by recognizing and destroying viral DNA.

What is FnCas9?

  • FnCas9 is a variant of the Cas9 enzyme derived from the bacterium Francisella novicida.
  • It is used in genome editing technologies, particularly within the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) system, to make precise modifications to DNA sequences.

What is CRISPR-Cas9 System?

  • CRISPR-Cas9 is a revolutionary genome-editing tool adapted from a natural bacterial defense mechanism against viruses.
  • Bacteria use CRISPR sequences to store segments of viral DNA, which helps them recognize and combat viruses in subsequent infections.
  • The most commonly used Cas9 enzyme is derived from Streptococcus pyogenes.

Mechanism:

  • Guide RNA (gRNA): A specifically designed RNA molecule that matches the target DNA sequence.
  • Cas9 Enzyme: Acts as molecular scissors that cut DNA at a location specified by the gRNA.
  • Proto-spacer Adjacent Motif (PAM): A short DNA sequence adjacent to the target site that Cas9 must recognize and bind to in order to cut the DNA.
  • DNA Repair: Once the DNA is cut, the cell’s natural repair mechanisms either repair the break or introduce desired genetic changes.

Applications:

  • Agriculture: Enhancing crop yield and nutritional value.
  • Healthcare: Diagnosing and treating genetic disorders.
  • Research: Studying gene functions and interactions.

Challenges with Traditional Cas9: SpCas9 can sometimes cut DNA at unintended sites, leading to potential unintended genetic modifications.

How FnCas9 overpowers traditional Cas9 (SpCas9)?

  • FnCas9 is known for its higher specificity in targeting DNA sequences compared to SpCas9, resulting in fewer off-target effects.
  • More accurate targeting reduces unintended genetic modifications.
  • It ensures more reliable and safer genome editing.

Achievements by Indian Scientists

  • Scientists at the CSIR-IGIB in New Delhi have modified FnCas9 to enhance its efficiency without compromising specificity.
  • Key Modifications include:
    • Amino Acid Tinkering: Researchers modified amino acids in FnCas9 that interact with the PAM sequence to increase binding affinity.
    • Improved Binding: Enhanced binding affinity allows FnCas9 to sit more securely on the DNA, improving gene-editing effectiveness.
    • Flexibility: The enhanced FnCas9 can access and edit hard-to-reach regions of the genome.

Experimental Results:

  • Enhanced FnCas9 cuts target DNA at a higher rate than the unmodified version.
  • FnCas9 improved ability to detect single-nucleotide changes in the genome, broadening its diagnostic and therapeutic applications.
PYQ:

[2019] What is Cas9 protein that is often mentioned in news?

(a) A molecular scissors used in targeted gene editing

(b) A biosensor used in the accurate detection of pathogens in patients

(c) A gene that makes plants pest-resistant

(d) A herbicidal substance synthesized in genetically modified crops

[2016] In the context of the developments in Bioinformatics, the term ‘transcriptome’, sometimes seen in the news, refers to:

(a) a range of enzymes used in genome editing

(b) the full range of mRNA molecules expressed by an organism

(c) the description of the mechanism of gene expression

(d) a mechanism of genetic mutations taking place in cells

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